Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008578: Acidothermus cellulolyticus 11B, complete genome

NCBI: NC_008578

Host Lineage: Acidothermus cellulolyticus; Acidothermus; Acidothermaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a thermotolerant cellulolytic actinomycete that was originally isolated from an acidic hot spring in Yellowstone National Park. A number of thermostable endoglucanases are produced by this organism, which are useful for degrading cellulose in the production of ethanol as a biofuel.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1591357*62659935243Island text2.1191322.965221.1264Neighbours11BLASTN+IslandViewer 591357.gbk
2889907*92219432288Island text1.7627825.463719.0691Neighbours11BLASTN889907.gbk
31827605*185916131557Island text1.9875721.496322.3605Neighbours11BLASTN+IslandViewer 1827605.gbk
42206500222474418245Island text1.4996819.5122.2256Neighbours11BLASTNIslandViewer 2206500.gbk
52226778224692120144Island text1.5538318.599220.4398Neighbours11BLASTNIslandViewer 2226778.gbk
62431074*245799926926Island text1.4168120.075418.8574Neighbours11BLASTN2431074.gbk