Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008577: Shewanella sp. ANA-3 chromosome 1, complete sequence

NCBI: NC_008577

Host Lineage: Shewanella; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from an arsenate treated wood pier that was in a brackish estuary (Eel Pond) in Woods Hole, Massachusetts. It is capable of converting As(V) to arsenite and may be used in bioremediation of contaminated sites.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
144184*6259918416Island text1.7141834.958755.9417Neighbours512BLASTN44184.gbk
261395863310219145Island text1.5134131.900531.8005Neighbours42BLASTN+613958.gbk
31015419103464419226Island text1.7517731.590524.126Neighbours21BLASTN+1015419.gbk
41455000148935334354Island text1.7324337.943322.7557Neighbours11BLASTN+IslandViewer 1455000.gbk
51489643151651426872Island text1.5898730.730221.9515Neighbours11BLASTN+IslandViewer 1489643.gbk
61579950160290022951Island text1.856232.225223.9989Neighbours21BLASTN+IslandViewer 1579950.gbk
71690946*171443823493Island text2.0922134.941824.5264Neighbours512BLASTNIslandViewer 1690946.gbk
81885809*190718721379Island text2.2156132.569321.1719Neighbours21BLASTN1885809.gbk
92115440*215134235903Island text1.8077432.840527.7265Neighbours21BLASTN+IslandViewer 2115440.gbk
102402165244759945435Island text2.6353234.868916.4145Neighbours21BLASTN+IslandViewer 2402165.gbk
112511326253076419439Island text1.4538833.639332.3365Neighbours21BLASTN+IslandViewer 2511326.gbk
122604281264200637726Island text1.8548434.987726.7965Neighbours21BLASTN+IslandViewer 2604281.gbk
132818546*284622227677Island text1.9400334.453138.5139Neighbours41BLASTN+IslandViewer 2818546.gbk
142910383*292929118909Island text1.8385231.195319.1071Neighbours42BLASTN2910383.gbk
153125675314666320989Island text1.544235.521535.8708Neighbours21BLASTN+IslandViewer 3125675.gbk
163485878350899223115Island text1.5294528.380438.5796Neighbours42BLASTN+3485878.gbk
173738758*376351324756Island text2.1368732.157434.2905Neighbours21BLASTNIslandViewer 3738758.gbk
184183361420632622966Island text1.416832.769930.162Neighbours42BLASTN4183361.gbk
194533574455327719704Island text2.1154231.25332.4156Neighbours21BLASTN+4533574.gbk
204611431464087329443Island text3.1311235.487518.3502Neighbours21BLASTN+4611431.gbk
214907497493408326587Island text2.1988233.405828.43Neighbours42BLASTN4907497.gbk