Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008576: Magnetococcus sp. MC-1, complete genome

NCBI: NC_008576

Host Lineage: Magnetococcus marinus; Magnetococcus; Magnetococcaceae; Magnetococcales; Proteobacteria; Bacteria

General Information: This magnetotactic bacterium was isolated from water from the Pettaquamscutt Estuary, in Rhode Island, USA. Migration is towards the anoxic/oxic interface which in the case of Magnetococcus sp. MC-1 is in a polar direction. The genome sequence of this organism will provide information on the production and regulation of the proteins involved in the magnetosome.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1357893*38069222800Island text1.7780732.526839.8851Neighbours113BLASTN+357893.gbk
267712870068023553Island text1.408333.505633.2075Neighbours113BLASTN+677128.gbk
3777949*80025522307Island text1.4430131.979631.5507Neighbours113BLASTN+IslandViewer 777949.gbk
41061171*108033619166Island text1.5387436.293245.3192Neighbours113BLASTN+1061171.gbk
51413778*143411220335Island text1.5421332.069824.6183Neighbours113BLASTN+IslandViewer 1413778.gbk
62011959203520323245Island text1.5138831.949245.3466Neighbours113BLASTN+2011959.gbk
72458573*247767719105Island text1.4894939.141538.3238Neighbours113BLASTN+IslandViewer 2458573.gbk
82710500273109920600Island text1.5333834.859650.70922710500.gbk
92868986289414625161Island text1.508130.496153.2403Neighbours113BLASTN+2868986.gbk
103307297*332806620770Island text1.5122332.405230.7366Neighbours113BLASTN+IslandViewer 3307297.gbk
113331825335513023306Island text1.5768436.307624.4891Neighbours13BLASTN+IslandViewer 3331825.gbk
123812500*383287320374Island text1.5537738.11233.4927Neighbours113BLASTN+3812500.gbk
134130000415190421905Island text1.8161638.79236.2826Neighbours113BLASTN4130000.gbk
144467745449464126897Island text1.6972431.955354.5468Neighbours113BLASTN+4467745.gbk
154701930*473149929570Island text1.922240.482142.8828Neighbours113BLASTN4701930.gbk