Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008573: Shewanella sp. ANA-3 plasmid 1, complete sequence

NCBI: NC_008573

Host Lineage: Shewanella; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from an arsenate treated wood pier that was in a brackish estuary (Eel Pond) in Woods Hole, Massachusetts. It is capable of converting As(V) to arsenite and may be used in bioremediation of contaminated sites.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
119531724745052134Island text2.1168646.515419.4085Neighbours42BLASTN+195317.gbk