Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008564: Borrelia afzelii PKo plasmid lp60, complete sequence

NCBI: NC_008564

Host Lineage: Borrelia afzelii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Causative agent of Lyme borreliosis. This species was isolated from a skin lesion from a Lyme disease patient in Europe in 1993. It is a specific aetological agent of acrodermatitis chronica atrophicans (ACA).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111910319103Island text2.6291711.794725.539Neighbours21BLASTN1.gbk
2409466349922554Island text1.9852310.967923.4438Neighbours21BLASTN40946.gbk