Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008555: Listeria welshimeri serovar 6b str. SLCC5334, complete genome

NCBI: NC_008555

Host Lineage: Listeria welshimeri; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: Nonpathogenic bacterium. This organism is a nonpathogenic Listeria found in soil, water, food, and sewage. First isolated from decaying plants. L. welshimeri bacteria are small (0.5 to 2.0 μm), non-spore-forming, gram-positive rods which are motile below 30°C by means of peritrichous flagella.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
140035242159921248Island text2.2492721.428643.2422Neighbours21BLASTN400352.gbk
244492747035525429Island text1.7646924.974541.8783Neighbours21BLASTN444927.gbk
369621771552919313Island text1.6727320.555740.2089Neighbours21BLASTN696217.gbk
41204000124219438195Island text1.9247820.140636.3667Neighbours21BLASTN+IslandViewer 1204000.gbk
51874878*190027525398Island text1.5435625.170238.403Neighbours21BLASTN+1874878.gbk
62597980*262082422845Island text1.4539226.422738.5735Neighbours21BLASTN+2597980.gbk
72628858*264800219145Island text1.5302125.048631.3315Neighbours21BLASTN2628858.gbk