Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008554: Syntrophobacter fumaroxidans MPOB, complete genome

NCBI: NC_008554

Host Lineage: Syntrophobacter fumaroxidans; Syntrophobacter; Syntrophobacteraceae; Syntrophobacterales; Proteobacteria; Bacteria

General Information: This organism is a syntrophic propionate-oxidizing bacterium isolated from granular sludge from an anaerobic sludge bed reactor treating sugar-beet processing wastewater. Propionate-oxidizing bacterium. This organism is able to oxidize propionate when grown in co-culture with hydrogen-consuming methanogens (syntrophic metabolism). This organism can also ferment fumarate when not in co-culture.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115674417837221629Island text1.641732.694430.0515Neighbours11BLASTN+IslandViewer 156744.gbk
248426750761823352Island text1.6140234.063732.1811Neighbours11BLASTN+484267.gbk
3840079*86450824430Island text1.7144724.604837.359Neighbours11BLASTN+840079.gbk
495600398290526903Island text1.6377828.992721.6209Neighbours11BLASTN+IslandViewer 956003.gbk
51177199119818320985Island text1.5420729.531928.537Neighbours33BLASTN1177199.gbk
61623041*164641423374Island text1.6945528.331715.5378Neighbours11BLASTNIslandViewer 1623041.gbk
71664131168509920969Island text1.5777127.593524.5523Neighbours33IslandViewer 1664131.gbk
82308500233130522806Island text1.9774732.286925.1193Neighbours11BLASTN+IslandViewer 2308500.gbk
92469156249662527470Island text2.26141.598423.5068Neighbours33BLASTN+IslandViewer 2469156.gbk
103055000*307730422305Island text1.6609727.437420.2948Neighbours11BLASTN+IslandViewer 3055000.gbk
113177723*320256524843Island text1.8503827.357539.4703Neighbours11BLASTN+3177723.gbk
124088882411520026319Island text1.6865125.08831.3233Neighbours11BLASTN+4088882.gbk
134586543461829531753Island text2.1198138.107227.0481Neighbours11BLASTN+IslandViewer 4586543.gbk
144699577472233422758Island text1.4501429.225428.822Neighbours11BLASTN4699577.gbk
154781500480071519216Island text1.6174723.738430.1234Neighbours11BLASTN4781500.gbk
164839116*486473925624Island text1.5868426.693629.653Neighbours11BLASTN+IslandViewer 4839116.gbk