Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008553: Methanosaeta thermophila PT, complete genome

NCBI: NC_008553

Host Lineage: Methanosaeta thermophila; Methanosaeta; Methanosaetaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: This thermophilic strain (PT; DSM 6194) was isolated from anaerobic digester sludge and is the type strain for the species. Produces methane from acetate. Methanosaeta thermophila is a thermophilic methanogen found widely distributed in the environment. This organism can metabolize acetate into methane and may be useful as a producer of biofuels.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1329458*35251023053Island text1.4437831.547921.0562Neighbours359BLASTN+329458.gbk
21038344*106673128388Island text3.0230643.095626.1949Neighbours359BLASTN+IslandViewer 1038344.gbk
31156285118059924315Island text1.7319735.09520.2439Neighbours359BLASTN1156285.gbk
41267580128882621247Island text1.6626232.947528.5918Neighbours359BLASTN+IslandViewer 1267580.gbk
51717000174600529006Island text1.9812936.971137.6338Neighbours359BLASTN+IslandViewer 1717000.gbk
61809780183227022491Island text1.5384427.675126.1725Neighbours359BLASTN+1809780.gbk
71858558*188399925442Island text1.6467429.378249.0316Neighbours25BLASTN1858558.gbk