Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008541: Arthrobacter sp. FB24 chromosome 1, complete sequence

NCBI: NC_008541

Host Lineage: Arthrobacter; Arthrobacter; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Arthrobacter sp. FB24 was isolated from soil contaminated with heavy metals and aromatic solvents. This strain has a high degree of tolerance to chromium and other metals, may be radiation resistant and is a hydrocarbon degrader.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
147264349960526963Island text1.9548618.516612.1693Neighbours11BLASTN+IslandViewer 472643.gbk
21042322108277040449Island text2.0433920.285421.2118Neighbours11BLASTN+IslandViewer 1042322.gbk
31503835*152678622952Island text1.6898317.477229.7944Neighbours11BLASTN+1503835.gbk
41931266195576724502Island text1.4858117.412513.7958Neighbours11BLASTN+1931266.gbk
52037793205695519163Island text1.5904917.45221.0805Neighbours11BLASTN+IslandViewer 2037793.gbk
62063218208405920842Island text1.7170319.326416.302Neighbours11BLASTN+IslandViewer 2063218.gbk
72119883214520025318Island text1.50419.318930.259Neighbours11IslandViewer 2119883.gbk
82989500300743117932Island text1.5728217.75624.6559Neighbours11BLASTN2989500.gbk
93282415*330766425250Island text1.7892122.228619.0794Neighbours11BLASTN3282415.gbk
103579442361432334882Island text1.7093519.505722.0621Neighbours11BLASTNIslandViewer 3579442.gbk
114066294409493828645Island text2.9406627.946621.1985Neighbours11BLASTN+IslandViewer 4066294.gbk
124679022*470999930978Island text1.8784822.095726.4641Neighbours11BLASTNIslandViewer 4679022.gbk