Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008536: Solibacter usitatus Ellin6076, complete genome

NCBI: NC_008536

Host Lineage: Solibacter usitatus; Solibacter; Solibacteraceae; Solibacterales; Acidobacteria; Bacteria

General Information: This strain was isolated from a rotationally grazed pasture of perennial ryegrass and white clover in Victoria, Australia. Solibacter usitatus is a member of the Acidobacteria, a group of organisms commonly found in water reservoirs, microbial mats, many different soil types, marine and freshwater sediments, as well as in hot-spring mats and sediments, etc. Furthermore, they sometimes form the dominant group in a habitat. These bacteria are involved in the first step of destruction of biologically complex molecules produced by autotrophic (capable of synthesizing their own nutrients) microorganisms.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1337765745723682Island text1.5518222.519533.7617Neighbours11BLASTN33776.gbk
235359537333819744Island text1.5588923.198442.7397Neighbours11BLASTN353595.gbk
343522145309917879Island text1.4898123.680735.3454Neighbours11BLASTN+IslandViewer 435221.gbk
481288283193919058Island text1.5358722.501231.0208Neighbours11IslandViewer 812882.gbk
51462344148391921576Island text1.5146123.391541.4947Neighbours11BLASTN1462344.gbk
61778500*180060022101Island text1.5205324.520945.7595Neighbours11BLASTN+1778500.gbk
72079052*212876149710Island text1.6490128.93419.189Neighbours11BLASTN+IslandViewer 2079052.gbk
82717891274033422444Island text1.4601323.315938.4578Neighbours11BLASTN2717891.gbk
92775517279847122955Island text1.4583125.960649.0011Neighbours11BLASTN2775517.gbk
102961460*298496123502Island text1.5552129.012632.7385Neighbours11BLASTNIslandViewer 2961460.gbk
113160540*318675826219Island text1.5873623.28238.6016Neighbours11BLASTN3160540.gbk
123282971330081017840Island text1.4979724.495444.9202Neighbours11BLASTN3282971.gbk
133601841362459922759Island text1.5736823.075840.36Neighbours11BLASTNIslandViewer 3601841.gbk
143988520*401059022071Island text1.6212128.24228.8944Neighbours11BLASTN+IslandViewer 3988520.gbk
154921224494204420821Island text1.4801923.990838.7623Neighbours11BLASTN4921224.gbk
165192235*521520622972Island text1.5049324.290242.8859Neighbours11BLASTN+5192235.gbk
175259438527936519928Island text1.4844926.398341.5763Neighbours11BLASTN+5259438.gbk
185421036544451623481Island text1.6674721.150337.6477Neighbours11BLASTNIslandViewer 5421036.gbk
195861495589635134857Island text1.6935625.074627.46Neighbours11+IslandViewer 5861495.gbk
207546973757700630034Island text1.5520228.98121.8346NeighboursBLASTNIslandViewer 7546973.gbk
217834632786150626875Island text1.620124.399844.0425Neighbours11BLASTN7834632.gbk
228541267857257731311Island text1.6242728.009622.7074Neighbours11BLASTN+IslandViewer 8541267.gbk
239538891*958717848288Island text1.6986226.8921.4602Neighbours11BLASTN+IslandViewer 9538891.gbk