Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008532: Streptococcus thermophilus LMD-9, complete genome

NCBI: NC_008532

Host Lineage: Streptococcus thermophilus; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Moderate thermophile. This strain is one of the fermenters used in the production of yogurt and mozzarella cheese. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. Streptococcus thermophilus is a lactic acid bacteria often used as a starter culture for fermented dairy products including yogurt and cheese.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1469888*49272322836Island text1.4928225.583745.7607NeighboursBLASTN469888.gbk
297351099609922590Island text2.8009322.987619.6004Neighbours21BLASTN+IslandViewer 973510.gbk
31769733179227422542Island text4.3852723.19736.43806Neighbours21BLASTN+1769733.gbk