Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008527: Lactococcus lactis subsp. cremoris SK11, complete genome

NCBI: NC_008527

Host Lineage: Lactococcus lactis; Lactococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain is recognized for the beneficial flavors it produces during cheese production. This subspecies is used to make hard cheeses. Microorganism used in cheese production. This microbe is a member of the lactic acid bacteria and produces lactic acid from sugars. It is found in many environments including plant and animal habitats. Lactococcus lactis is used as a starter culture for the production of cheese products (such as cheddar) and in milk fermentations and, as such, is one of the most important microbes in the food industry. The degradation of casein, acidification by lactic acid, and production of flavor compounds, processes that are caused by the bacteria, contribute to the final product.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1125723*14841122689Island text1.7610216.606925.734Neighbours21BLASTN125723.gbk
261183663409922264Island text1.3729720.434118.6746Neighbours21BLASTN+IslandViewer 611836.gbk
3740060*76330623247Island text1.6157922.938335.2804Neighbours21BLASTN+740060.gbk
41036757105542518669Island text2.4351116.901834.2003Neighbours21BLASTN+IslandViewer 1036757.gbk
52112137213325721121Island text1.5104819.478134.5551Neighbours21BLASTN+IslandViewer 2112137.gbk