Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008510: Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,

NCBI: NC_008510

Host Lineage: Leptospira borgpetersenii; Leptospira; Leptospiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain is lethal in hamsters. This strain is lethal in hamsters. This organism is a bacterial pathogen of cattle. This organism colonizes in the kidney and reproductive tracts of infected animals. There is also a risk of zoonotic infections in humans, especially those who work with cattle.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1995612*101841822807Island text1.3769421.358230.1498Neighbours21BLASTN995612.gbk
21339926136843028505Island text1.7612717.897919.6263Neighbours21BLASTN+1339926.gbk
32605500262669021191Island text1.9956518.103312.2198Neighbours21BLASTN+IslandViewer 2605500.gbk
42877000289751420515Island text1.7503616.400217.0118Neighbours341BLASTN+IslandViewer 2877000.gbk
53147839*316559917761Island text1.4926220.847530.0767Neighbours341BLASTN3147839.gbk
63189349*321209922751Island text1.3895921.437335.0774Neighbours341BLASTN+IslandViewer 3189349.gbk