Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008508: Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,

NCBI: NC_008508

Host Lineage: Leptospira borgpetersenii; Leptospira; Leptospiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a human clinical sample. Bacterial pathogens of cattle that cause zoonotic infections in humans. This organism is a bacterial pathogen of cattle. This organism colonizes in the kidney and reproductive tracts of infected animals. There is also a risk of zoonotic infections in humans, especially those who work with cattle.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1481000*49909918100Island text1.5393124.823733.2531Neighbours341BLASTNIslandViewer 481000.gbk
2508000*53017222173Island text1.5516922.823430.9295Neighbours341BLASTNIslandViewer 508000.gbk
377203879509923062Island text1.6056128.98744.4654Neighbours341BLASTN+IslandViewer 772038.gbk
41382036140525223217Island text1.6856617.856921.6342Neighbours21BLASTNIslandViewer 1382036.gbk
52572450259481922370Island text2.0765818.862813.7803Neighbours21BLASTN+IslandViewer 2572450.gbk