Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008497: Lactobacillus brevis ATCC 367, complete genome

NCBI: NC_008497

Host Lineage: Lactobacillus brevis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactic acid bacterium used in fermentation. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This organism is used as a starter culture for various types of beer, sourdough, and silage fermentation.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1321605098118822Island text2.0065426.671947.6367Neighbours320BLASTN+32160.gbk
279144*9709917956Island text1.6991627.06145.6816Neighbours320BLASTN79144.gbk
3447427*46717819752Island text1.9643227.638649.4503Neighbours320BLASTN+447427.gbk
4556365*57476918405Island text1.9154227.428953.4718Neighbours320BLASTN556365.gbk
51111891*114836436474Island text1.7777228.418838.1802Neighbours21BLASTN+IslandViewer 1111891.gbk
61498430*151761719188Island text1.5026135.493752.7835Neighbours320BLASTN1498430.gbk
71575884*159946023577Island text1.8602326.836124.3757Neighbours21BLASTN+IslandViewer 1575884.gbk
82038612*205881920208Island text1.6632828.102230.0097Neighbours320+2038612.gbk