Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008435: Rhodopseudomonas palustris BisA53, complete genome

NCBI: NC_008435

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Four different strains were isolated from 2 sites, one pristine and one polluted. Environmental bacterium with potential use in bioremediation. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1604772*64849843727Island text2.5261630.600425.5743Neighbours11BLASTN+IslandViewer 604772.gbk
2854576*87728822713Island text2.3657924.589333.3768Neighbours11BLASTN854576.gbk
31131242*118022248981Island text1.8685426.404620.409Neighbours11BLASTN+IslandViewer 1131242.gbk
41215437*131209196655Island text2.1652428.279823.8989Neighbours11BLASTN+IslandViewer 1215437.gbk
52368000241142943430Island text1.7784728.530526.6285Neighbours11BLASTN+IslandViewer 2368000.gbk
62658986*275828699301Island text1.7880425.419221.3463Neighbours11BLASTN+IslandViewer 2658986.gbk
73915110393809922990Island text1.4821127.188714.6912Neighbours11BLASTN+3915110.gbk
84530797*454959918803Island text1.5109219.069213.3025Neighbours11BLASTNIslandViewer 4530797.gbk
94842720*486062917910Island text1.5398917.695227.0374Neighbours11BLASTN4842720.gbk