Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008391: Burkholderia cepacia AMMD chromosome 2, complete sequence

NCBI: NC_008391

Host Lineage: Burkholderia ambifaria; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from the rhizosphere of healthy pea plants in Wisconsin, USA, in 1985. Pathogenic in cystic fibrosis patients. These bacteria present great versatility to adapt to diverse environments, and are capable of degrading pollutants in water and soil, and fixing atmospheric nitrogen. This species include strains isolated from cystic fibrosis patients as well as strains with potential use in biocontrol.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1111217*14116329947Island text1.7688125.12821.8867Neighbours11BLASTN+IslandViewer 111217.gbk
227125429909927846Island text2.0169626.59528.1928Neighbours11BLASTNIslandViewer 271254.gbk
340438842981525428Island text2.3409632.68930.9165Neighbours11BLASTNIslandViewer 404388.gbk
463999666160321608Island text1.649127.195736.4896Neighbours11BLASTN+639996.gbk
569922271789818677Island text1.4854615.612817.0301Neighbours11BLASTN+IslandViewer 699222.gbk
686534088883923500Island text1.5530419.941622.4713Neighbours11BLASTNIslandViewer 865340.gbk
71210451123772327273Island text1.6497223.066320.6503Neighbours11BLASTN+IslandViewer 1210451.gbk
81768456179209923644Island text2.161624.591120.3643Neighbours11BLASTN+IslandViewer 1768456.gbk
92045348*207376828421Island text1.7648122.003326.7079Neighbours11BLASTN+IslandViewer 2045348.gbk
102253188227809924912Island text1.9454722.234621.3098Neighbours11BLASTNIslandViewer 2253188.gbk
112404443242322518783Island text1.453319.154322.0277Neighbours11BLASTN+IslandViewer 2404443.gbk