Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008390: Burkholderia cepacia AMMD chromosome 1, complete sequence

NCBI: NC_008390

Host Lineage: Burkholderia ambifaria; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from the rhizosphere of healthy pea plants in Wisconsin, USA, in 1985. Pathogenic in cystic fibrosis patients. These bacteria present great versatility to adapt to diverse environments, and are capable of degrading pollutants in water and soil, and fixing atmospheric nitrogen. This species include strains isolated from cystic fibrosis patients as well as strains with potential use in biocontrol.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1235155*25345118297Island text1.4966718.148118.3884Neighbours11BLASTN+IslandViewer 235155.gbk
240731543675629442Island text2.1187427.294631.7783Neighbours11BLASTNIslandViewer 407315.gbk
381857184350924939Island text1.9776925.353128.9574Neighbours11BLASTN+IslandViewer 818571.gbk
4987052101116924118Island text1.8214718.129915.1641Neighbours11BLASTN+IslandViewer 987052.gbk
51293823*131887025048Island text1.9044723.27924.0494Neighbours11BLASTNIslandViewer 1293823.gbk
62018201204273624536Island text2.2177825.144525.9096Neighbours11BLASTN+IslandViewer 2018201.gbk
72058500208332424825Island text1.9584323.04125.3594Neighbours11BLASTNIslandViewer 2058500.gbk
82156188*218229326106Island text1.7029322.575616.426Neighbours11BLASTNIslandViewer 2156188.gbk
92448379247019921821Island text1.9725424.410330.2872Neighbours11BLASTNIslandViewer 2448379.gbk
102643653267440130749Island text1.5310619.760820.4265Neighbours11BLASTN+IslandViewer 2643653.gbk