Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008369: Francisella tularensis subsp. holarctica OSU18, complete genome

NCBI: NC_008369

Host Lineage: Francisella tularensis; Francisella; Francisellaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: Isolated from a beaver that died of tularemia in Oklahoma in 1978. Causative agent of tularemia. This organism was first identified by Edward Francis as the causative agent of a plague-like illness that affected squirrels in Tulare county in California in the early part of the 20th century. The organism now bears his name. The disease, which has been noted throughout recorded history, can be transmitted to humans by infected ticks or deerflies, infected meat, or by aerosol, and thus is a potential bioterrorism agent. This organism has a high infectivity rate, and can invade phagocytic and nonphagocytic cells, multiplying rapidly. Once within a macrophage, the organism can escape the phagosome and live in the cytosol. It is an aquatic organism, and can be found living inside protozoans, similar to what is observed with Legionella.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18251510244819934Island text1.5860415.371720.776NeighboursBLASTNIslandViewer 82515.gbk
2221382*25459933218Island text1.8237821.945338.0031NeighboursBLASTN+IslandViewer 221382.gbk
3291640*31483523196Island text1.7177816.407527.1369Neighbours21BLASTN291640.gbk
451499553466619672Island text1.6437516.530926.0431Neighbours21BLASTN514995.gbk
555794158069322753Island text1.5453917.284828.9134Neighbours21BLASTN+557941.gbk
688097590050619532Island text1.7653315.47124.6772Neighbours21BLASTN880975.gbk
7939356*95877619421Island text1.610416.520229.827Neighbours21BLASTN+939356.gbk
81083598*110999126394Island text1.4241516.38522.4022Neighbours21BLASTN1083598.gbk
91667437*168579718361Island text1.6815916.077927.9571Neighbours21BLASTN1667437.gbk
101702885*175731754433Island text1.8626517.157728.7532Neighbours21BLASTN+1702885.gbk
111780945180541524471Island text1.9150418.445531.8221Neighbours21BLASTN+1780945.gbk
121830442*185176221321Island text1.5533816.263422.8712NeighboursBLASTN1830442.gbk