Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008358: Hyphomonas neptunium ATCC 15444, complete genome

NCBI: NC_008358

Host Lineage: Hyphomonas neptunium; Hyphomonas; Hyphomonadaceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Marine member of dimorphic prosthecate bacteria. This organism is also known as Hyphomicrobium neptunium. It has a biphasic life style, which consists of a motile phase of flagellated swarmer cells, and a cessile phase in which a long prosthecate is produced at one end of the bacteria through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. These organisms can colonize the surfaces of marine environments which enables additional species to colonize at later stages. This organism may be of use in treatment of water as they attach to a solid surface and are capable of degradation of a number of pollutants including aromatic hydrocarbons, dimethyl sulfoxide and methyl chloride.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1263458*28474121284Island text1.6115729.300123.4151Neighbours11BLASTN+IslandViewer 263458.gbk
279839083934340954Island text2.5279533.23126.6526Neighbours11BLASTN+IslandViewer 798390.gbk
31623278*164165618379Island text1.4982727.115823.9067Neighbours11BLASTN+IslandViewer 1623278.gbk
41789816*181807328258Island text1.5486626.736439.575Neighbours11BLASTN1789816.gbk
51861505*188413422630Island text1.5658123.148736.6062Neighbours11BLASTN1861505.gbk
62257787227802420238Island text1.5425125.446930.3036Neighbours11BLASTN+2257787.gbk
72574343259679222450Island text1.5317625.959821.8858Neighbours11BLASTN+IslandViewer 2574343.gbk
82638245270358665342Island text1.8453429.63426.8229Neighbours11BLASTN+IslandViewer 2638245.gbk
92808299*282846320165Island text1.9918524.85139.0949Neighbours11BLASTN+2808299.gbk