Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008347: Maricaulis maris MCS10, complete genome

NCBI: NC_008347

Host Lineage: Maricaulis maris; Maricaulis; Hyphomonadaceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Marine oligotrophs. Maricaulis maris MCS10 was isolated from Puget Sound in Washington, USA. Formerly Caulobacter maris, this organism inhabits marine environments and plays an important part in biogeochemical cycling of organic nutrients. This bacterium undergoes an unusual developmental cycle in which a swarming motile cell becomes a stalked cell that is attached to a solid surface. The stalked cell then undergoes asymmetric cell division and produces one flagellated motile daughter cell and one stalked daughter cell.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117400021080136802Island text1.485828.362624.8164Neighbours11BLASTN+IslandViewer 174000.gbk
21636660*166438627727Island text2.016931.981630.7102Neighbours11BLASTN+IslandViewer 1636660.gbk
32515921255263336713Island text1.6339526.660924.9507Neighbours11BLASTN+IslandViewer 2515921.gbk
42677000269484817849Island text1.4963425.790434.3525Neighbours11BLASTN+IslandViewer 2677000.gbk
53034100305916425065Island text1.7270727.79620.4119Neighbours11BLASTN+IslandViewer 3034100.gbk