Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008346: Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete

NCBI: NC_008346

Host Lineage: Syntrophomonas wolfei; Syntrophomonas; Syntrophomonadaceae; Clostridiales; Firmicutes; Bacteria

General Information: Syntrophomonas wolfeisubsp. wolfei str. Goettingen (DSM 2245B) was isolated from anaerobic digestor sludge. Fatty acid-oxidizing bacterium. This organism is an anaerobic syntrophic fatty acid-oxidizing bacterium. It is the only bacterium known to produce energy from anaerobic degradation of saturated four to eight carbon fatty acids with protons serving as the electron acceptor. The cells have an unusual multilayered gram-negative cell wall. Syntrophomonas wolfei grows in coculture with Methanospirillum hungatei and can be isolated from anaerobic environments such as aquatic sediment or sewage digestor sludge.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136176*5530119126Island text2.0550932.693956.0391Neighbours22BLASTN36176.gbk
2331820*36832836509Island text1.7590129.155434.289Neighbours21BLASTN331820.gbk
3410940*43452923590Island text1.8459532.948547.5354Neighbours22BLASTN410940.gbk
458430561520930905Island text2.3260333.131419.4426Neighbours21BLASTN+IslandViewer 584305.gbk
5800500*82770727208Island text1.6515429.657139.0577Neighbours21BLASTNIslandViewer 800500.gbk
6983816*100718823373Island text1.6415827.325542.6605Neighbours22BLASTN983816.gbk
71047500*106959922100Island text1.9335235.910150.1072Neighbours22BLASTN+1047500.gbk
81117802113708219281Island text2.347429.30626.4608Neighbours21BLASTN+1117802.gbk
91431051145644725397Island text1.5613228.402437.8752Neighbours21BLASTN+1431051.gbk
101499963*153280432842Island text5.5586235.261321.2862Neighbours21BLASTN+IslandViewer 1499963.gbk
112251353226935218000Island text1.5414728.799944.0188Neighbours22BLASTN2251353.gbk
122370254239181121558Island text2.0928530.189231.6396Neighbours21BLASTN+2370254.gbk
132523289256197838690Island text2.1727132.00824.923Neighbours21BLASTN+IslandViewer 2523289.gbk
142579756260426124506Island text1.6314831.024925.906Neighbours21BLASTN+IslandViewer 2579756.gbk