Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008344: Nitrosomonas eutropha C91, complete genome

NCBI: NC_008344

Host Lineage: Nitrosomonas eutropha; Nitrosomonas; Nitrosomonadaceae; Nitrosomonadales; Proteobacteria; Bacteria

General Information: Nitrosomonas eutropha C91 was isolated from a sewage disposal plant in Chicago. Ammonia-oxidizing bacterium. This species consists of ammonia-oxidizing bacteria that catalyze the oxidation of ammonia to nitrite and contribute to the global cycling of nitrogen (a process called nitrification). This obligate chemolithoautotroph is studied for that reason.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*3873538735Island text1.5636536.797135.4261Neighbours11BLASTN+IslandViewer 1.gbk
249039*13459985561Island text2.1326241.42724.0484Neighbours11BLASTN+IslandViewer 49039.gbk
3554229*58419629968Island text1.5391838.962638.6068Neighbours45BLASTN+IslandViewer 554229.gbk
4669498*69235322856Island text1.6649334.156119.408Neighbours11BLASTN+IslandViewer 669498.gbk
5811386*84559634211Island text1.6173738.96225.7085Neighbours11BLASTNIslandViewer 811386.gbk
695024197148221242Island text2.1631631.850742.324Neighbours41BLASTN+950241.gbk
71364142*138709922958Island text1.7500340.681421.8624Neighbours41BLASTN+IslandViewer 1364142.gbk
81899317*192509925783Island text1.9755134.096443.3944Neighbours41BLASTN+1899317.gbk
92374761240364328883Island text1.6768235.509823.4289Neighbours11BLASTN+IslandViewer 2374761.gbk
102434344*245352619183Island text1.6048731.791131.5172Neighbours21BLASTN+2434344.gbk
112465042248871223671Island text2.7348732.797320.6846Neighbours41BLASTN+IslandViewer 2465042.gbk