Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008341: Nitrosomonas eutropha C91 plasmid1, complete sequence

NCBI: NC_008341

Host Lineage: Nitrosomonas eutropha; Nitrosomonas; Nitrosomonadaceae; Nitrosomonadales; Proteobacteria; Bacteria

General Information: Nitrosomonas eutropha C91 was isolated from a sewage disposal plant in Chicago. Ammonia-oxidizing bacterium. This species consists of ammonia-oxidizing bacteria that catalyze the oxidation of ammonia to nitrite and contribute to the global cycling of nitrogen (a process called nitrification). This obligate chemolithoautotroph is studied for that reason.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1290385221923182Island text1.710434.277719.2106Neighbours41BLASTN+29038.gbk