Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008340: Alkalilimnicola ehrlichei MLHE-1, complete genome

NCBI: NC_008340

Host Lineage: Alkalilimnicola ehrlichii; Alkalilimnicola; Ectothiorhodospiraceae; Chromatiales; Proteobacteria; Bacteria

General Information: This chemoautotrophic strain was isolated from Mono Lake in California, which contains arsenic and has high pH and salt concentrations. Arsenite-oxidizing bacterium. Alkalilimnicola ehrlichei is capable of growth with arsenite [As(III)] as the electron donor with nitrate as electron acceptor. It may be responsible for production of arsenate [As(V)] in anoxic lake bottom.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111649114366427174Island text2.711320.030232.5615Neighbours11BLASTN+IslandViewer 116491.gbk
227722330180624584Island text2.4768419.901235.0722Neighbours11BLASTN+277223.gbk
3362000*38524523246Island text2.694420.438129.8386Neighbours11BLASTN+362000.gbk
4420126*44865428529Island text3.5661329.022324.4773Neighbours11BLASTN+IslandViewer 420126.gbk
5480399*50429523897Island text3.6776322.047831.9644Neighbours11BLASTN480399.gbk
6682469*71226029792Island text1.5933419.673128.8265Neighbours11BLASTN+IslandViewer 682469.gbk
777420679412919924Island text1.4718917.795519.2959Neighbours11BLASTN774206.gbk
81075500109977624277Island text2.025720.515627.9654Neighbours11BLASTNIslandViewer 1075500.gbk
91241300*125980118502Island text1.8010516.494421.9698Neighbours11BLASTN+IslandViewer 1241300.gbk
101303607132215618550Island text1.6428717.591823.6813Neighbours11BLASTN+IslandViewer 1303607.gbk
111733735176122027486Island text1.5567317.558419.8258Neighbours11BLASTN+IslandViewer 1733735.gbk
122034810*206790533096Island text3.8373132.21128.0552Neighbours11BLASTN+IslandViewer 2034810.gbk
132272692229766424973Island text2.0082419.690527.7996Neighbours11BLASTNIslandViewer 2272692.gbk
142614000*263940025401Island text1.6707319.274329.6931Neighbours11BLASTN+IslandViewer 2614000.gbk