Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008322: Shewanella sp. MR-7, complete genome

NCBI: NC_008322

Host Lineage: Shewanella; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Black Sea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137353139273219202Island text1.6197130.48625.3441Neighbours21BLASTN+IslandViewer 373531.gbk
2641197*66698525789Island text1.6253429.328820.8734Neighbours42BLASTNIslandViewer 641197.gbk
372261274059917988Island text1.9963230.055334.7241Neighbours42BLASTN722612.gbk
41186000*121709931100Island text2.0080734.608629.0913Neighbours21BLASTNIslandViewer 1186000.gbk
51595500*162859933100Island text3.8732537.324630.0946Neighbours21BLASTN+IslandViewer 1595500.gbk
61708631*173114222512Island text2.1156233.706226.5093Neighbours42BLASTNIslandViewer 1708631.gbk
71898000*192173523736Island text2.6990433.76713.8161Neighbours21BLASTN+1898000.gbk
82077628*211677239145Island text1.8776131.094329.1136Neighbours21BLASTN+IslandViewer 2077628.gbk
92637646*265622418579Island text1.6199930.228633.5973Neighbours41BLASTN2637646.gbk
102716676274827431599Island text2.1276632.701919.5273Neighbours21BLASTN+IslandViewer 2716676.gbk
112983951300671222762Island text1.614935.007332.373Neighbours21BLASTN+2983951.gbk
123585601*360929823698Island text1.9958732.017624.7564Neighbours21BLASTNIslandViewer 3585601.gbk
133758500378050122002Island text2.2013134.605331.722Neighbours42BLASTNIslandViewer 3758500.gbk
144000330401980219473Island text1.4977136.308424.0772Neighbours53BLASTN+IslandViewer 4000330.gbk
154611000462903818039Island text1.7515430.225629.4616Neighbours21BLASTN+IslandViewer 4611000.gbk