Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008319: Synechococcus sp. CC9311, complete genome

NCBI: NC_008319

Host Lineage: Synechococcus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain was isolated in 1993 from the oligotrophic edge of the California Current after nitrate enrichment and low light incubation at a depth of 95m in 1993. Photosynthesis. Coastal aquatic environment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113686316274425882Island text3.2331543.008733.3499Neighbours13BLASTN+IslandViewer 136863.gbk
2171847*20983837992Island text3.8920246.334933.3483Neighbours13BLASTN+IslandViewer 171847.gbk
326289428843225539Island text2.4057438.763639.2308Neighbours13BLASTN+IslandViewer 262894.gbk
4478499*51832339825Island text2.4613739.711437.2478Neighbours13BLASTNIslandViewer 478499.gbk
5571821*59685625036Island text2.6947838.388849.2088Neighbours13BLASTN+IslandViewer 571821.gbk
661513563513920005Island text1.870233.213844.7679Neighbours13BLASTN615135.gbk
7635157*66109925943Island text2.3511540.55220.5227Neighbours13BLASTN+635157.gbk
878788180974121861Island text2.0465235.479437.4814Neighbours13BLASTN+787881.gbk
9962968102259959632Island text1.9879137.583225.2816Neighbours21BLASTN+962968.gbk
101081614110985128238Island text2.4557342.230418.4051Neighbours13BLASTN+IslandViewer 1081614.gbk
111119076114075821683Island text1.9055235.096223.3691Neighbours13BLASTN1119076.gbk
121167213*119083423622Island text2.3707535.398246.1952Neighbours13BLASTN+1167213.gbk
131272251*129780025550Island text2.001336.506826.0966Neighbours13BLASTN+1272251.gbk
141306482*136465358172Island text2.6791240.933827.3767Neighbours21BLASTNIslandViewer 1306482.gbk
151376938*140097624039Island text1.9159636.523222.5632Neighbours13BLASTN+IslandViewer 1376938.gbk
161574908*159381118904Island text1.7195833.61537.8243Neighbours13BLASTN+1574908.gbk
171601494162186920376Island text1.9844134.773739.9856Neighbours13BLASTN+1601494.gbk
181727686175186224177Island text2.2205837.474741.1322Neighbours13BLASTN+1727686.gbk
191829571184827718707Island text1.8645834.356841.0891Neighbours13BLASTNIslandViewer 1829571.gbk
201950889*197599225104Island text2.0303337.660430.7873Neighbours13BLASTNIslandViewer 1950889.gbk
212007752203322125470Island text2.4028839.786433.2781Neighbours13BLASTNIslandViewer 2007752.gbk
222112000213763225633Island text1.8140834.061925.5634Neighbours21BLASTN+IslandViewer 2112000.gbk
232172928219731824391Island text1.9866232.906746.5099Neighbours13BLASTN+2172928.gbk
242335801*235812122321Island text2.1109235.451137.0691Neighbours13BLASTN2335801.gbk
252471341*249128119941Island text1.7682333.259443.0381Neighbours13BLASTN+2471341.gbk