Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008314: Ralstonia eutropha H16 chromosome 2, complete sequence

NCBI: NC_008314

Host Lineage: Cupriavidus necator; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain (ATCC 17699; H16), formerly Alcaligenes eutrophus was originally isolated from sludge. Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation. Other strains have been studied for their ability to produce polyhydroxybutyrates which have industrial application. Another strain is able to attack other bacteria and fungi when nutrients in the soil are low.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1365005712620627Island text1.6319717.081114.3603Neighbours11BLASTN+IslandViewer 36500.gbk
247772252609948378Island text1.7089918.420915.0712Neighbours11BLASTN+IslandViewer 477722.gbk
31202963122138318421Island text1.6659916.69217.7001Neighbours11BLASTNIslandViewer 1202963.gbk
41275617129809922483Island text1.5506322.951134.5962Neighbours11BLASTN+1275617.gbk
51465643*151598150339Island text1.7972718.070123.4749Neighbours11BLASTN+IslandViewer 1465643.gbk
61559102157947720376Island text1.6468618.681613.5238Neighbours11BLASTN+IslandViewer 1559102.gbk
71825223184828923067Island text1.5002318.51918.3762Neighbours11BLASTN+1825223.gbk
81955793*197880923017Island text1.4480417.722513.3025Neighbours11BLASTN+IslandViewer 1955793.gbk
92611873263563323761Island text1.534717.339521.5739Neighbours11BLASTN+IslandViewer 2611873.gbk
102686851271587829028Island text3.2165626.543217.5913Neighbours11BLASTN+IslandViewer 2686851.gbk
112744553278801643464Island text1.7570420.153716.8799Neighbours11BLASTN+IslandViewer 2744553.gbk