Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008277: Borrelia afzelii PKo, complete genome

NCBI: NC_008277

Host Lineage: Borrelia afzelii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Causative agent of Lyme borreliosis. This species was isolated from a skin lesion from a Lyme disease patient in Europe in 1993. It is a specific aetological agent of acrodermatitis chronica atrophicans (ACA). This organism can be differentiated from other Borrelia species by monoclonal antibody hybridization.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127274129229919559Island text1.5146816.5430.8107Neighbours21BLASTN272741.gbk
2387811*40949621686Island text1.5681517.190234.1942Neighbours21BLASTN+387811.gbk
3428926*46331934394Island text2.374720.284937.2542Neighbours21BLASTN428926.gbk
4485299*51060325305Island text1.6038215.359629.4854Neighbours21BLASTN+485299.gbk