Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008255: Cytophaga hutchinsonii ATCC 33406, complete genome

NCBI: NC_008255

Host Lineage: Cytophaga hutchinsonii; Cytophaga; Cytophagaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: This organism is abundantly found in soil, freshwater, and marine habitats and it is motile by a gliding motility system that does not utilize flagella. Degradation of various recalcitrant organic macromolecules such as chitin, pectin, and cellulose is a hallmark of this organism.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1324556114828694Island text1.6015822.166818.9Neighbours21+IslandViewer 32455.gbk
290888192702418144Island text1.672521.175812.7908Neighbours21BLASTN908881.gbk
31344674137359928926Island text2.7492223.196712.8965Neighbours21BLASTNIslandViewer 1344674.gbk
41500067*152421624150Island text1.8966224.619817.7001Neighbours21BLASTN1500067.gbk
51701195173412532931Island text1.6379323.345437.0807Neighbours21BLASTN+IslandViewer 1701195.gbk
61764585178859924015Island text1.581236.251836.2681Neighbours383+1764585.gbk
72839147287156632420Island text2.0128125.68918.7129Neighbours21BLASTNIslandViewer 2839147.gbk
83285561330752421964Island text1.7837721.166415.684Neighbours21BLASTN3285561.gbk
93331613337748645874Island text1.6969125.115421.081Neighbours21BLASTNIslandViewer 3331613.gbk
103578883*360220323321Island text1.509123.163426.2285Neighbours21BLASTN3578883.gbk
113912500394973737238Island text1.6538632.732839.679Neighbours383BLASTN3912500.gbk
124043045*406543822394Island text2.3724821.653434.383Neighbours21BLASTN+4043045.gbk
134208913423109922187Island text1.6308631.344838.5023Neighbours41BLASTN+4208913.gbk