Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008254: Mesorhizobium sp. BNC1, complete genome

NCBI: NC_008254

Host Lineage: Chelativorans; Chelativorans; Phyllobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This organism was isolated from a mixed-culture enriched from sewage using the chelating agent EDTA (binds divalent cations - ethylenediamine tetraacetic acid) as the sole carbon and nitrogen source. EDTA is often found at toxic waste sites where it is bound to metals and radionuclides, which affects bioremediation efforts. This bacterium is capable of EDTA degradation by itself.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1102465*12336020896Island text1.5848426.52619.2179Neighbours11BLASTN+IslandViewer 102465.gbk
253459055841423825Island text1.5225425.342929.3702Neighbours11BLASTN+IslandViewer 534590.gbk
361143762981918383Island text1.5004726.872629.3337Neighbours11BLASTN+611437.gbk
42496622251537818757Island text1.4753424.01221.114Neighbours11BLASTNIslandViewer 2496622.gbk
52728693*275003421342Island text1.6488521.956626.3329Neighbours11BLASTN2728693.gbk
63143770318463540866Island text1.546925.699733.3061Neighbours11BLASTN+IslandViewer 3143770.gbk
73246306*327014823843Island text1.7281125.934334.5001Neighbours11BLASTN3246306.gbk
83980327399975519429Island text1.4542422.920725.1858Neighbours11BLASTN+3980327.gbk