Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008245: Francisella tularensis subsp. tularensis FSC 198, complete genome

NCBI: NC_008245

Host Lineage: Francisella tularensis; Francisella; Francisellaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: This subspecies is virulent in humans, the strain FSC 198 was isolated in Slovakia from a mite and is virulent in an animal model. Causative agent of tularemia. This organism was first identified by Edward Francis as the causative agent of a plague-like illness that affected squirrels in Tulare county in California in the early part of the 20th century. The organism now bears his name. The disease, which has been noted throughout recorded history, can be transmitted to humans by infected ticks or deerflies, infected meat, or by aerosol, and thus is a potential bioterrorism agent. This organism has a high infectivity rate, and can invade phagocytic and nonphagocytic cells, multiplying rapidly. Once within a macrophage, the organism can escape the phagosome and live in the cytosol. It is an aquatic organism, and can be found living inside protozoans, similar to what is observed with Legionella.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124652*6389439243Island text1.9239317.646231Neighbours21BLASTN+24652.gbk
2668528735120500Island text1.7445515.536825.4538Neighbours21BLASTN66852.gbk
3141982*17415532174Island text1.6767418.727432.7378Neighbours21BLASTN+141982.gbk
4324926*35809933174Island text1.7870221.779138.2234NeighboursBLASTNIslandViewer 324926.gbk
5529378*55441325036Island text1.6455415.040829.2565Neighbours21BLASTN529378.gbk
665024367298222740Island text1.5732216.239126.2919Neighbours21BLASTN+650243.gbk
7707984*73119423211Island text1.4797115.801326.2395Neighbours21BLASTN+707984.gbk
81405000*142332918330Island text1.4938815.494326.2791Neighbours21BLASTN1405000.gbk
91525877*155460728731Island text1.7231716.840226.5913Neighbours21BLASTN+1525877.gbk
101577297160309925803Island text1.4824416.786227.1288Neighbours21BLASTN1577297.gbk
111625715164632420610Island text1.706416.215827.2981Neighbours21BLASTN1625715.gbk
121794629181759922971Island text1.8626117.083529.9092Neighbours21BLASTN1794629.gbk
131845525186858823064Island text1.5751915.333223.3707NeighboursBLASTN1845525.gbk