Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008229: Helicobacter acinonychis str. Sheeba, complete genome

NCBI: NC_008229

Host Lineage: Helicobacter acinonychis; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This species (originally described as Helicobacter acinonyx) was isolated from the stomach of a cheetah with gastritis. It was found to be most closely related to the human pathogen H. pylori on the basis of 16S rRNA phylogeny and densitometry scans of polyacrylamide protein gels.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1118000*14020822209Island text1.4908926.513943.5559Neighbours343BLASTN118000.gbk
21149480117353024051Island text1.715925.161137.9165Neighbours21BLASTN+IslandViewer 1149480.gbk
31397361142029022930Island text1.4766128.672241.6007Neighbours343BLASTN+IslandViewer 1397361.gbk