Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008212: Haloquadratum walsbyi DSM 16790, complete genome

NCBI: NC_008212

Host Lineage: Haloquadratum walsbyi; Haloquadratum; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: A uniquely square archaeon. This hyperhalophile is of specific interest because of its unique square shape and extraordinarily large size (40m x 40m). Its culture conditions were optimized in 2004.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
161567*8352621960Island text1.5441337.743248.255Neighbours31BLASTN61567.gbk
210303314059937567Island text1.6523347.143733.4294Neighbours12BLASTN103033.gbk
31082006110484322838Island text1.5777243.383427.3218Neighbours12BLASTN1082006.gbk
41295061131848923429Island text1.5842835.860535.7829BLASTNIslandViewer 1295061.gbk
51347000137559928600Island text1.8279946.113415.2341Neighbours12BLASTN+IslandViewer 1347000.gbk
61386834141367826845Island text1.5919141.64628.3383Neighbours12BLASTN+IslandViewer 1386834.gbk
71685367*170309917733Island text1.4634233.590725.6548Neighbours119BLASTN+1685367.gbk
81759535*178209922565Island text1.4934434.940454.9762Neighbours31BLASTN+1759535.gbk
92591750*261679225043Island text1.6902136.577453.5253BLASTN+IslandViewer 2591750.gbk
102865737288960423868Island text1.5207242.558417.2555Neighbours119BLASTN+IslandViewer 2865737.gbk
112940000297259932600Island text1.7354845.170320.3983Neighbours12BLASTN+IslandViewer 2940000.gbk
122978786300520526420Island text1.6369148.767221.2253Neighbours119BLASTN+2978786.gbk