Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008209: Roseobacter denitrificans OCh 114, complete genome

NCBI: NC_008209

Host Lineage: Roseobacter denitrificans; Roseobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: The aerobic phototrophic bacteria are ubiquitous as plant symbionts, free-living in lakes and ocean surface waters, soils and even near deep sea hydrothermal vents. Marine bacterium capable of aerobic anoxygenic photosynthesis. This bacterium was first isolated from a marine sediment collected on the coast of Australia. This organism's PufC photosynthetic protein has been studied as a classical tetraheme cytochrome, as it has all four possible heme-binding motifs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
125366327713323471Island text1.5196827.450122.2256Neighbours11BLASTN+IslandViewer 253663.gbk
2695269*72009924831Island text2.5089829.258345.6737Neighbours11BLASTN+695269.gbk
3761487*79250431018Island text1.6543827.077627.9698Neighbours11BLASTN+IslandViewer 761487.gbk
41097607*111626218656Island text1.5120130.25624.0529Neighbours11BLASTN+IslandViewer 1097607.gbk
51385094*140700921916Island text1.6235725.216329.6399Neighbours11BLASTN+IslandViewer 1385094.gbk
62367500238645618957Island text1.4949925.796418.5254Neighbours11BLASTNIslandViewer 2367500.gbk
73313087333311220026Island text1.5283228.970143.4356Neighbours11BLASTN+IslandViewer 3313087.gbk