Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008095: Myxococcus xanthus DK 1622, complete genome

NCBI: NC_008095

Host Lineage: Myxococcus xanthus; Myxococcus; Myxococcaceae; Myxococcales; Proteobacteria; Bacteria

General Information: First isolated from soil in 1941. Bacterium with a multi-stage lifecycle. M.xanthus is a Gram-negative rod-shaped bacterium. This organism undergoes a complex development and differentiation pathway. When cell density increases, the organism switches to "social motility" where aggregates of cells can gather together into masses termed fruiting bodies that may consist of up to 100 000 cells. This organism is also utilized industrially to produce the anticancer drug epithilone.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11401919*142623224314Island text1.6287617.437617.6223Neighbours11BLASTN+IslandViewer 1401919.gbk
21428665145887430210Island text2.1467121.198327.1105Neighbours11BLASTN+IslandViewer 1428665.gbk
31697157172169424538Island text1.508318.056913.6192Neighbours11BLASTN+1697157.gbk
42011748203018618439Island text1.8452815.913822.3901Neighbours11BLASTNIslandViewer 2011748.gbk
52031997205502323027Island text1.4651417.144913.6497Neighbours11BLASTN+IslandViewer 2031997.gbk
62071500210351032011Island text1.8473917.511722.5635Neighbours11BLASTN+IslandViewer 2071500.gbk
72117952213765319702Island text1.6456516.202714.1022Neighbours11BLASTN+IslandViewer 2117952.gbk
82146693216870322011Island text1.7040316.716727.7546Neighbours11BLASTN+2146693.gbk
92212644223059917956Island text1.5217816.743722.0612Neighbours11BLASTN+IslandViewer 2212644.gbk
102420066243911019045Island text1.8357216.026326.7572Neighbours11BLASTN+IslandViewer 2420066.gbk
112450500*246940318904Island text1.6710616.749822.4936Neighbours11BLASTN+IslandViewer 2450500.gbk
122497842251805020209Island text1.6384915.479115.952Neighbours11BLASTN+2497842.gbk
133371673339616424492Island text2.0052420.084334.6706Neighbours11BLASTN3371673.gbk
143719441*374439224952Island text1.8159818.734821.4085Neighbours11BLASTN3719441.gbk
153785848380882622979Island text1.5570218.506814.2283Neighbours11BLASTN3785848.gbk
164032412405086618455Island text1.5440815.041315.5439Neighbours11BLASTN4032412.gbk
174061899*408366021762Island text1.8129917.009227.5917Neighbours11BLASTN4061899.gbk
184189082*423409745016Island text3.1203127.020322.7267Neighbours11BLASTN+IslandViewer 4189082.gbk
194669947469286922923Island text2.0838718.907614.3772Neighbours11BLASTN4669947.gbk
204858117*490039542279Island text1.9427318.993724.9302Neighbours11BLASTN4858117.gbk
215062491508841725927Island text2.9759321.512924.2578Neighbours11BLASTN+IslandViewer 5062491.gbk
225312926*533428921364Island text1.9149516.984814.8605Neighbours11BLASTN5312926.gbk
235377000539459917600Island text1.6524416.074914.277Neighbours11BLASTN5377000.gbk
245527707555977932073Island text2.258819.127927.3411Neighbours11BLASTN+IslandViewer 5527707.gbk
255585346*562741242067Island text1.8036715.196413.1137Neighbours11BLASTN5585346.gbk
266052139608087828740Island text1.9503917.804617.721Neighbours11BLASTN+IslandViewer 6052139.gbk
276143738*618324739510Island text1.6030116.115516.4843Neighbours11BLASTN+6143738.gbk
286253610*628320829599Island text2.3784419.966221.5149Neighbours11BLASTN6253610.gbk
296323456634843724982Island text1.8789416.960118.1995Neighbours11BLASTN6323456.gbk
306559009657924920241Island text1.5643318.528720.7492Neighbours11BLASTN+6559009.gbk
316697789*672160023812Island text1.6012616.897316.9631Neighbours11BLASTN+6697789.gbk
326759500678099421495Island text1.9774418.119418.0636Neighbours11BLASTN+6759500.gbk
336877388689529417907Island text2.5760615.983718.6442Neighbours11BLASTN+6877388.gbk
347139056716265723602Island text1.6112318.113124.9491Neighbours11BLASTN+7139056.gbk
357172047*719953227486Island text2.4550219.827521.3565Neighbours11BLASTN7172047.gbk
367211395723513223738Island text1.49118.549430.9295Neighbours11BLASTN+7211395.gbk
377499255752215922905Island text1.4771217.023324.0894Neighbours11BLASTN7499255.gbk
387563441758702723587Island text1.5820816.158315.0881Neighbours11BLASTN+7563441.gbk
397614000*763399619997Island text1.5353817.408814.9823Neighbours11BLASTN7614000.gbk
408198970*822901030041Island text3.6938725.564534.1445Neighbours11BLASTN+8198970.gbk
418698766872823629471Island text2.3713423.108926.8685Neighbours11BLASTN+8698766.gbk
428772893879205219160Island text1.521915.719215.6779Neighbours11BLASTN8772893.gbk
438837612887264835037Island text1.4895218.201921.1902Neighbours11BLASTN8837612.gbk
448890464*891959929136Island text1.8800919.813220.794Neighbours11BLASTN+8890464.gbk