Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008061: Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence

NCBI: NC_008061

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (AU 1054) was isolated from the blood of a patient with CF. This microbe has three chromosomes. Opportunistic pathogen. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
119028724895258666Island text2.4317726.968727.4947Neighbours11BLASTN+IslandViewer 190287.gbk
242850144790319403Island text1.5189421.142426.1908Neighbours11BLASTN+IslandViewer 428501.gbk
31864282188910424823Island text1.9245620.742417.5805Neighbours11BLASTN+IslandViewer 1864282.gbk
42106848213789431047Island text1.7722719.680916.2935Neighbours11BLASTN+IslandViewer 2106848.gbk
52153495218337929885Island text2.0663819.669314.5572Neighbours11BLASTN+IslandViewer 2153495.gbk
62193000221082217823Island text1.5022516.810616.9448Neighbours11BLASTN+IslandViewer 2193000.gbk
72368517239913930623Island text1.8966923.851716.5837Neighbours11BLASTN+IslandViewer 2368517.gbk
82548849*257109922251Island text1.9520124.224224.2758Neighbours11BLASTN+IslandViewer 2548849.gbk
92582000260842826429Island text1.7969918.77420.2866Neighbours11BLASTN+IslandViewer 2582000.gbk
102773670279999926330Island text1.5291219.011417.7914Neighbours11BLASTNIslandViewer 2773670.gbk