Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008060: Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence

NCBI: NC_008060

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (AU 1054) was isolated from the blood of a patient with CF. This microbe has three chromosomes. Opportunistic pathogen. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1306170*34178635617Island text2.8792829.50225.4382Neighbours11BLASTN+IslandViewer 306170.gbk
234185136409922249Island text1.4463816.293826.1055Neighbours11BLASTN+IslandViewer 341851.gbk
347686150729730437Island text2.5059725.973525.7834Neighbours11BLASTN+IslandViewer 476861.gbk
41182378*120591323536Island text1.9563521.796521.6414Neighbours11BLASTN+IslandViewer 1182378.gbk
51346581136716420584Island text1.548319.246518.5061Neighbours11BLASTN+IslandViewer 1346581.gbk
61544920*156855223633Island text1.5468519.28522.2134Neighbours11BLASTNIslandViewer 1544920.gbk
71945597*197248126885Island text2.590328.299527.5978Neighbours11BLASTN+IslandViewer 1945597.gbk
82913671*294708933419Island text2.4222924.364723.3971Neighbours11BLASTN+IslandViewer 2913671.gbk
93155133*320509949967Island text2.4216726.34123.8468Neighbours11BLASTN+IslandViewer 3155133.gbk