Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008048: Sphingopyxis alaskensis RB2256, complete genome

NCBI: NC_008048

Host Lineage: Sphingopyxis alaskensis; Sphingopyxis; Sphingomonadaceae; Sphingomonadales; Proteobacteria; Bacteria

General Information: Isolated from Resurrection Bay in the Gulf of Alaska. It is a model oligotrophic organism and forms a very small cell size. his genus was created from the Sphingomonas genus on the basis of phylogenetic, phenotypic, and chemotaxonomic characteristics. Sphingopyxis alaskensis is one of the most numerically abundant microbes found in oligotrophic marine waters and is an important contributor of biomass.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
138964542759937955Island text1.6244822.091223.5466Neighbours11BLASTN+IslandViewer 389645.gbk
22838769*286662127853Island text2.4523525.515830.6287Neighbours11BLASTN2838769.gbk