Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008027: Pseudomonas entomophila L48, complete genome

NCBI: NC_008027

Host Lineage: Pseudomonas entomophila; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is highly pathogenic for a variety of insects in both larvae and adults. It was isolated from fruit flies and decaying fruits taken from a sample set obtained from the Island of Guadeloupe and tested for induction of a systemic immune response in Drosophila. Destruction of the insect gut tissue occurs during infection.Analysis of the proteins encoded by the genome indicated a number of potential virulence factors, although a type III secretion system was not found.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155850758141922913Island text2.3438526.662437.9144Neighbours11BLASTNIslandViewer 558507.gbk
271350073434320844Island text1.8688522.467829.5425Neighbours11BLASTN713500.gbk
377589680259926704Island text3.4764532.908933.0013Neighbours11BLASTN+IslandViewer 775896.gbk
4896000*91964923650Island text2.2649124.47936.3752Neighbours11BLASTN896000.gbk
51559083*158236923287Island text1.9732724.913340.6698Neighbours11BLASTNIslandViewer 1559083.gbk
61847040187459927560Island text3.3840830.459637.486Neighbours11BLASTN+1847040.gbk
72051821*207333821518Island text1.6515220.620134.7317Neighbours11BLASTN+IslandViewer 2051821.gbk
82331617235762526009Island text2.9188428.699735.509Neighbours11BLASTN+IslandViewer 2331617.gbk
92397255242125624002Island text1.9964123.617444.2701Neighbours11BLASTN+IslandViewer 2397255.gbk
102621443*264643624994Island text1.4550321.710836.5757Neighbours11BLASTN2621443.gbk
112648560*267079122232Island text2.8054725.490725.3898Neighbours11BLASTN+IslandViewer 2648560.gbk
122909000292988020881Island text1.8469521.527722.9304Neighbours11BLASTNIslandViewer 2909000.gbk
132996947302312426178Island text1.6013218.52521.8602Neighbours11BLASTN+2996947.gbk
143387366341245025085Island text1.9097519.126924.3087Neighbours11BLASTN+IslandViewer 3387366.gbk
153677500369685019351Island text1.5424622.078736.4539Neighbours11BLASTN+3677500.gbk
163844355388629641942Island text2.1738224.456435.8881Neighbours11BLASTN+IslandViewer 3844355.gbk
173953951*397851024560Island text3.1573930.366841.8452Neighbours11BLASTNIslandViewer 3953951.gbk
184280000*430482424825Island text1.8715228.462946.1166Neighbours11BLASTN+4280000.gbk
194889662*491964529984Island text3.3681137.831545.9922Neighbours11BLASTN+IslandViewer 4889662.gbk
204953432*497941825987Island text2.8710432.017627.5677Neighbours11BLASTNIslandViewer 4953432.gbk
215533311555523921929Island text1.7537223.42235.6079Neighbours11BLASTN+5533311.gbk
225576458559851822061Island text1.8178921.01428.8296Neighbours11BLASTN+5576458.gbk
235842740587100528266Island text1.6613421.476223.6975Neighbours11BLASTNIslandViewer 5842740.gbk