Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008025: Deinococcus geothermalis DSM 11300, complete genome

NCBI: NC_008025

Host Lineage: Deinococcus geothermalis; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This organism was isolated from a hot spring at Agnano, Naples, Italy. Deinococcus geothermalis is a radiation resistant bacterium. This organism has been identified as a primary biofilm former on paper making machinery. The sequence of this organism will provide information on the mechanism and regulation of attachment and biofilm formation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1316302*36590049599Island text2.3830920.719828.8291Neighbours11BLASTN+IslandViewer 316302.gbk
2430487*45748426998Island text1.9723418.339819.7824Neighbours11BLASTN+430487.gbk
3669281*69340424124Island text1.5483517.771227.1856Neighbours11BLASTN669281.gbk
41152594*117670324110Island text1.8672218.920227.0983Neighbours11BLASTN+IslandViewer 1152594.gbk
51588348*160765819311Island text1.5072519.637624.1991Neighbours11BLASTN+1588348.gbk
61768756179085022095Island text1.5842617.996118.7028Neighbours11BLASTN+IslandViewer 1768756.gbk
71799106182081721712Island text1.960317.878914.659Neighbours11BLASTN+1799106.gbk
81889891191296423074Island text1.6408815.70120.2765Neighbours11BLASTN+IslandViewer 1889891.gbk
91998500*202271224213Island text2.2216922.03123.536Neighbours11BLASTN1998500.gbk
102211813223283021018Island text1.8582417.863121.4381Neighbours11BLASTN+IslandViewer 2211813.gbk
112407618*243033022713Island text1.4540116.293812.1513Neighbours11BLASTN2407618.gbk