Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008010: Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence

NCBI: NC_008010

Host Lineage: Deinococcus geothermalis; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This organism was isolated from a hot spring at Agnano, Naples, Italy. Deinococcus geothermalis is a radiation resistant bacterium. This organism has been identified as a primary biofilm former on paper making machinery. The sequence of this organism will provide information on the mechanism and regulation of attachment and biofilm formation.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1765917659Island text2.3007820.602830.93Neighbours11BLASTN1.gbk
2369785594818971Island text1.5199218.547322.253Neighbours11BLASTN+36978.gbk
310566513017124507Island text1.4812719.990318.3701Neighbours11BLASTN+105665.gbk
420079621909918304Island text1.4825119.43720.2461Neighbours11BLASTN+200796.gbk
522251624636523850Island text2.7887420.819.8532Neighbours11BLASTN+222516.gbk
632156134217420614Island text1.4956619.838312.2914Neighbours11BLASTN+321561.gbk
744965246986420213Island text1.551917.670813.2111Neighbours11BLASTN+449652.gbk