Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007974: Ralstonia metallidurans CH34 chromosome 2, complete sequence

NCBI: NC_007974

Host Lineage: Cupriavidus metallidurans; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was first identified in the heavy metal-contaminated sludge of a settling tank in Belgium in the late 1970s. This organism, formerly Ralstonia metallidurans, is capable of growth in the presence of a large number of heavy metals including silver, cadmium, chromium, cobalt, copper, mercury, nickel, lead, thallium, and zinc.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113817617323335058Island text1.6505419.144622.3779Neighbours11BLASTN+138176.gbk
278521680824923034Island text1.5084618.494615.1846Neighbours11BLASTN785216.gbk
393400095746723468Island text1.5117623.850941.9357Neighbours11BLASTN934000.gbk
41007834103035922526Island text1.5054919.023628.8829Neighbours11BLASTN+1007834.gbk
51135863115837322511Island text1.5918920.394225.2128Neighbours11BLASTN+1135863.gbk
61607500162887921380Island text1.5839120.025917.2241Neighbours11BLASTN1607500.gbk
71717828174075222925Island text1.7251618.534222.9748Neighbours11BLASTN+1717828.gbk
82048000*209210744108Island text1.8071324.390522.7025Neighbours11BLASTN+2048000.gbk
92097334217099573662Island text1.7708923.482524.1488Neighbours11BLASTN+2097334.gbk
102323436234121717782Island text1.5808917.540124.662Neighbours11BLASTN+2323436.gbk