Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007973: Ralstonia metallidurans CH34 chromosome 1, complete sequence

NCBI: NC_007973

Host Lineage: Cupriavidus metallidurans; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was first identified in the heavy metal-contaminated sludge of a settling tank in Belgium in the late 1970s. This organism, formerly Ralstonia metallidurans, is capable of growth in the presence of a large number of heavy metals including silver, cadmium, chromium, cobalt, copper, mercury, nickel, lead, thallium, and zinc.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
149960652396824363Island text1.5238522.568116.153Neighbours11BLASTN+IslandViewer 499606.gbk
21411714144204530332Island text1.8344625.847926.419Neighbours11BLASTN+IslandViewer 1411714.gbk
31785985180459918615Island text1.5828819.069218.0046Neighbours11BLASTN+IslandViewer 1785985.gbk
41821753184776126009Island text1.5405722.090219.6455Neighbours11BLASTNIslandViewer 1821753.gbk
51889076191109922024Island text1.8059721.839122.2838Neighbours11BLASTN+IslandViewer 1889076.gbk
62150962*217292621965Island text1.6513621.462327.6511Neighbours11BLASTN+IslandViewer 2150962.gbk
72348481*238802339543Island text2.054229.076322.7001Neighbours11BLASTN+IslandViewer 2348481.gbk
82773427279771424288Island text1.8344925.75919.2101Neighbours11BLASTN+IslandViewer 2773427.gbk
92888824*291938730564Island text2.8959830.7836.7238Neighbours11BLASTN+IslandViewer 2888824.gbk
102952004297379621793Island text2.5225628.762542.9511Neighbours11BLASTNIslandViewer 2952004.gbk
113065632*308854022909Island text1.46919.807914.5389Neighbours11BLASTN+IslandViewer 3065632.gbk
123240866326591125046Island text1.7928825.389519.9337Neighbours11BLASTN+IslandViewer 3240866.gbk