Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007969: Psychrobacter cryohalolentis K5, complete genome

NCBI: NC_007969

Host Lineage: Psychrobacter cryohalolentis; Psychrobacter; Moraxellaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism was isolated from saline liquid (12-14%) found 11-24 m below the surface within a forty thousand-year-old Siberian permafrost at the Kolyma-Indigirka lowland in Siberia. Psychrotolerant organism. These bacteria are commonly isolated from low temperature environments, Psychrobacter spp. are cold-adapted organisms that are often isolated from extreme environments such as permafrost or the Antarctic ice. Psychrobacter cryohalolentis, formerly Psychrobacter cryopegella is an psychrotolerant bacterium. This organism can grow at -10 degrees C with rapid growth at these temperatures.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
172608675476528680Island text2.449725.067223.5201Neighbours21BLASTN+IslandViewer 726086.gbk
21076287109542019134Island text2.1454922.720124.1077Neighbours21BLASTN+IslandViewer 1076287.gbk
31095438112593430497Island text2.7894823.52214.337Neighbours21BLASTN+IslandViewer 1095438.gbk
41664500168581021311Island text2.588224.2889.66698Neighbours21BLASTN+IslandViewer 1664500.gbk
52885249*292211536867Island text1.9614323.105118.0707Neighbours21BLASTN+IslandViewer 2885249.gbk