Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007964: Nitrobacter hamburgensis X14, complete genome

NCBI: NC_007964

Host Lineage: Nitrobacter hamburgensis; Nitrobacter; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Nitrobacter hamburgensis X14 was isolated from soil. Nitrite-oxidizing soil bacterium. Members of this genus are found in marine, freshwater, and terrestrial habitats, often in association with ammonia-oxidizing bacteria. These organisms oxidize nitrite, generated by the oxidation of ammonia, to nitrate and play an important role in the global nitrogen cycle. The enzyme involved in nitrite oxidation, nitrite oxidoreductase, can also reduce nitrate to nitrite in the absence of oxygen, allowing Nitrobacter sp. to grow anaerobically. Nitrobacter hamburgensis is commonly isolated from freshwater, soil, and sewage sludge. This organism has been used in biofilms to remove nitrogen from wastewater.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132882536913940315Island text1.5627921.30228.1357Neighbours11BLASTN+IslandViewer 328825.gbk
2717590*73977322184Island text1.8943727.528534.5014Neighbours11BLASTN+717590.gbk
32152000217413022131Island text1.4538823.996827.3968Neighbours11BLASTN+IslandViewer 2152000.gbk
42762000*278109919100Island text1.5589823.364522.5469Neighbours11BLASTN+2762000.gbk
53036771306048323713Island text1.4285327.942620.6237Neighbours11BLASTN+3036771.gbk
63638415366224323829Island text1.7007727.05717.2514Neighbours11BLASTN+IslandViewer 3638415.gbk
74157500417736419865Island text1.5431923.820529.0961Neighbours11BLASTN+IslandViewer 4157500.gbk