Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007963: Chromohalobacter salexigens DSM 3043, complete genome

NCBI: NC_007963

Host Lineage: Chromohalobacter salexigens; Chromohalobacter; Halomonadaceae; Oceanospirillales; Proteobacteria; Bacteria

General Information: Chromohalobacter salexigens DSM 3043 was first isolated from a solar salt facility on Bonaire Island, Netherlands Antilles. A moderate halophile which can grow on a variety of salts. This bacterium is a moderate halophile, yet does not require high concentrations of sodium chloride. The salt requirements of this organism can be met by ions of other salts, such as potassium, rubidium, ammonium, bromide. Several plasmids have been isolated from this organism. Plasmid pMH1 contains genes for resistance to kanamycin, neomycin, and tetracycline. A smaller plasmid, pHE1, which does not code for antibiotic resistance genes, has also been isolated.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131729134102923739Island text1.7411723.489231.5934Neighbours11BLASTN+317291.gbk
281414884084326696Island text1.6326122.975427.2079Neighbours11BLASTN+IslandViewer 814148.gbk
31190847124782656980Island text4.1975137.697927.4662Neighbours11BLASTN+IslandViewer 1190847.gbk
41370903*139119320291Island text1.8022522.753533.3963Neighbours11BLASTN+IslandViewer 1370903.gbk
51552761*157843725677Island text2.0479727.587437.2148Neighbours11BLASTN+1552761.gbk
61582089161676234674Island text3.0722132.132638.0336Neighbours11BLASTN+IslandViewer 1582089.gbk
71908964193444325480Island text3.5047539.884138.4519Neighbours114BLASTN+IslandViewer 1908964.gbk
82232000225937927380Island text3.0262128.602337.3725Neighbours11BLASTN+IslandViewer 2232000.gbk
92512478*253370821231Island text1.5213222.753527.683Neighbours11BLASTNIslandViewer 2512478.gbk
102555012*257573920728Island text1.7668823.048430.4239Neighbours11BLASTN2555012.gbk
112644930268018935260Island text3.4661836.474828.0788Neighbours11BLASTN+IslandViewer 2644930.gbk
122777066279798320918Island text1.6218124.226330.3763Neighbours11BLASTN+2777066.gbk
133113739313569421956Island text1.676422.403925.9426Neighbours11BLASTN+IslandViewer 3113739.gbk
143225306325338328078Island text5.0503645.774628.4977Neighbours11BLASTNIslandViewer 3225306.gbk
153500468352206621599Island text1.6662523.540930.8242Neighbours11BLASTN3500468.gbk
163553678*357230918632Island text1.9097922.002726.7024Neighbours11BLASTN3553678.gbk
173574000359672322724Island text2.2059724.546629.6443Neighbours11BLASTN+IslandViewer 3574000.gbk