Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007958: Rhodopseudomonas palustris BisB5, complete genome

NCBI: NC_007958

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Four different strains were isolated from 2 sites, one pristine and one polluted. Environmental bacterium with potential use in bioremediation. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
149852839523411Island text1.5181424.428525.8558Neighbours11BLASTNIslandViewer 4985.gbk
2396439*42143724999Island text2.3392125.399728.0536Neighbours11BLASTNIslandViewer 396439.gbk
3830000*86140231403Island text2.3099628.002124.551Neighbours11BLASTN+IslandViewer 830000.gbk
42370619240281732199Island text1.7323122.266820.2756Neighbours11BLASTN+IslandViewer 2370619.gbk
52423335*244565022316Island text1.5745524.615825.3977Neighbours11BLASTN+IslandViewer 2423335.gbk
64371125*441443443310Island text1.6412119.653519.6008Neighbours11BLASTN+IslandViewer 4371125.gbk
74541110*456409922990Island text2.2413725.73430.4106Neighbours11BLASTN4541110.gbk