Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007947: Methylobacillus flagellatus KT, complete genome

NCBI: NC_007947

Host Lineage: Methylobacillus flagellatus; Methylobacillus; Methylophilaceae; Methylophilales; Proteobacteria; Bacteria

General Information: This strain was isolated from activated sludge found at the wastewater treatment plant in Moscow, Russia and is the fastest growing methylotroph discovered. Methanol-degrading bacterium. Methylobacillus flagellatus is a methylotroph, able to grow on compounds such as methanol and methyamines. These organisms play a role in the environmental cycling of carbon and nitrogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1290864*30939718534Island text1.4691633.584649.7442Neighbours45BLASTN+290864.gbk
248582850833122504Island text1.61929.879833.5355Neighbours11BLASTN485828.gbk
3577315*59793020616Island text1.7557528.916425.1809Neighbours11BLASTNIslandViewer 577315.gbk
462121364060919397Island text1.5370329.377446.0897Neighbours14BLASTN621213.gbk
579745682317625721Island text1.3390829.353133.7008Neighbours11BLASTN797456.gbk
61229807*125158321777Island text1.6675230.850826.8415Neighbours13BLASTN+1229807.gbk
71429165144770218538Island text1.4938933.906932.0715Neighbours11BLASTN1429165.gbk
81556437*158119324757Island text1.7295131.51726.0522Neighbours11BLASTN1556437.gbk
91703326172311219787Island text1.5842127.372637.2619Neighbours13BLASTN+1703326.gbk
102140000*218514745148Island text4.5672645.773933.975Neighbours41BLASTNIslandViewer 2140000.gbk
112447635*249025042616Island text1.5517629.228135.7616Neighbours14BLASTN2447635.gbk