Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007940: Rickettsia bellii RML369-C, complete genome

NCBI: NC_007940

Host Lineage: Rickettsia bellii; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This strain (RML 369-C) was isolated in embryonated chicken eggs from a triturated (powdered) pool of unfed adult Dermacentor variabilis ticks collected from vegetation near Fayetteville, Arkansas, USA, in 1966. Transmitted via American ticks. This organism represents the third group of Rickettsial species and is separate from the spotted fever group and the typhus group. This organism is transovarially transmitted in American ticks and shows the largest range of host organisms including Dermacentor and Amblyomma.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19794912566527717Island text1.6633516.261625.9973Neighbours21BLASTN97949.gbk
2266000*28816822169Island text1.5786713.10826.1359Neighbours21BLASTN+266000.gbk
332294834166218715Island text1.6310812.673318.5163Neighbours21BLASTN+322948.gbk
4669143*68959920457Island text1.7931613.888220.0512Neighbours21BLASTN+669143.gbk
5782207*80170519499Island text1.5343112.755423.6143Neighbours21BLASTN+782207.gbk
61138324*116323224909Island text2.0043413.828626.0502Neighbours21BLASTN+1138324.gbk
71178000120112223123Island text1.4715415.351427.2445Neighbours21BLASTN1178000.gbk
81235250*125869223443Island text1.6115413.786424.2389Neighbours21BLASTN+1235250.gbk
91435701*145874023040Island text1.7292312.095724.9665Neighbours21BLASTN+1435701.gbk
101485006*151623031225Island text1.9311319.639332.6545Neighbours21BLASTN+1485006.gbk